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Tytuł :
Evaluation of a Parsimonious COVID-19 Outbreak Prediction Model: Heuristic Modeling Approach Using Publicly Available Data Sets.
Autorzy :
Gupta AK; Indiana University, Bloomington, IN, United States.; Center for Biomedical Informatics, Regenstrief Institute, Indianapolis, IN, United States.
Grannis SJ; Center for Biomedical Informatics, Regenstrief Institute, Indianapolis, IN, United States.; School of Medicine, Indiana University, Indianapolis, IN, United States.
Kasthurirathne SN; Center for Biomedical Informatics, Regenstrief Institute, Indianapolis, IN, United States.; School of Medicine, Indiana University, Indianapolis, IN, United States.
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Źródło :
Journal of medical Internet research [J Med Internet Res] 2021 Jul 26; Vol. 23 (7), pp. e28812. Date of Electronic Publication: 2021 Jul 26.
Typ publikacji :
Journal Article
MeSH Terms :
Computer Simulation*
Datasets as Topic*
Heuristics*
Public Sector*
COVID-19/*epidemiology
Disease Outbreaks/*statistics & numerical data
Forecasting/*methods
COVID-19/prevention & control ; California/epidemiology ; Humans ; Indiana/epidemiology ; Iowa/epidemiology ; Models, Biological ; SARS-CoV-2
Czasopismo naukowe
Tytuł :
The Clinician and Dataset Shift in Artificial Intelligence.
Autorzy :
Finlayson SG; Harvard Medical School, Boston, MA.
Subbaswamy A; Johns Hopkins University, Baltimore, MD.
Singh K; University of Michigan Medical School, Ann Arbor, MI.
Bowers J; Yale Law School, New Haven, CT.
Kupke A; Boston University School of Law, Boston, MA.
Zittrain J; Harvard Law School, Cambridge, MA.
Kohane IS; Harvard Medical School, Boston, MA.
Saria S; Bayesian Health, New York, NY .
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Źródło :
The New England journal of medicine [N Engl J Med] 2021 Jul 15; Vol. 385 (3), pp. 283-286.
Typ publikacji :
Letter; Research Support, N.I.H., Extramural; Research Support, U.S. Gov't, Non-P.H.S.
MeSH Terms :
Artificial Intelligence*
Datasets as Topic*
Humans ; Information Technology ; Machine Learning ; Medical Informatics
Raport
Tytuł :
The COVID-19 Data Portal: accelerating SARS-CoV-2 and COVID-19 research through rapid open access data sharing.
Autorzy :
Harrison PW; European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus, Hinxton, Cambridge CB10 1SD, UK.
Lopez R; European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus, Hinxton, Cambridge CB10 1SD, UK.
Rahman N; European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus, Hinxton, Cambridge CB10 1SD, UK.
Allen SG; European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus, Hinxton, Cambridge CB10 1SD, UK.
Aslam R; European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus, Hinxton, Cambridge CB10 1SD, UK.
Buso N; European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus, Hinxton, Cambridge CB10 1SD, UK.
Cummins C; European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus, Hinxton, Cambridge CB10 1SD, UK.
Fathy Y; European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus, Hinxton, Cambridge CB10 1SD, UK.
Felix E; European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus, Hinxton, Cambridge CB10 1SD, UK.
Glont M; European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus, Hinxton, Cambridge CB10 1SD, UK.
Jayathilaka S; European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus, Hinxton, Cambridge CB10 1SD, UK.
Kadam S; European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus, Hinxton, Cambridge CB10 1SD, UK.
Kumar M; European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus, Hinxton, Cambridge CB10 1SD, UK.
Lauer KB; ELIXIR, Wellcome Genome Campus, Hinxton, Cambridge CB10 1SD, UK.
Malhotra G; European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus, Hinxton, Cambridge CB10 1SD, UK.
Mosaku A; European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus, Hinxton, Cambridge CB10 1SD, UK.
Edbali O; European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus, Hinxton, Cambridge CB10 1SD, UK.
Park YM; European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus, Hinxton, Cambridge CB10 1SD, UK.
Parton A; European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus, Hinxton, Cambridge CB10 1SD, UK.
Pearce M; European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus, Hinxton, Cambridge CB10 1SD, UK.
Estrada Pena JF; European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus, Hinxton, Cambridge CB10 1SD, UK.
Rossetto J; European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus, Hinxton, Cambridge CB10 1SD, UK.
Russell C; European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus, Hinxton, Cambridge CB10 1SD, UK.
Selvakumar S; European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus, Hinxton, Cambridge CB10 1SD, UK.
Sitjà XP; ELIXIR, Wellcome Genome Campus, Hinxton, Cambridge CB10 1SD, UK.
Sokolov A; European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus, Hinxton, Cambridge CB10 1SD, UK.
Thorne R; European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus, Hinxton, Cambridge CB10 1SD, UK.
Ventouratou M; European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus, Hinxton, Cambridge CB10 1SD, UK.
Walter P; European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus, Hinxton, Cambridge CB10 1SD, UK.
Yordanova G; European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus, Hinxton, Cambridge CB10 1SD, UK.
Zadissa A; European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus, Hinxton, Cambridge CB10 1SD, UK.
Cochrane G; European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus, Hinxton, Cambridge CB10 1SD, UK.
Blomberg N; ELIXIR, Wellcome Genome Campus, Hinxton, Cambridge CB10 1SD, UK.
Apweiler R; European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus, Hinxton, Cambridge CB10 1SD, UK.
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Źródło :
Nucleic acids research [Nucleic Acids Res] 2021 Jul 02; Vol. 49 (W1), pp. W619-W623.
Typ publikacji :
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms :
Biomedical Research*
COVID-19*/epidemiology
COVID-19*/genetics
COVID-19*/virology
Databases, Factual*
Datasets as Topic*
Information Dissemination*
Open Access Publishing*
SARS-CoV-2*/chemistry
SARS-CoV-2*/genetics
SARS-CoV-2*/metabolism
SARS-CoV-2*/ultrastructure
Databases, Bibliographic ; Disease Outbreaks ; Humans ; Pandemics ; Time Factors ; Viral Proteins/chemistry ; Viral Proteins/genetics
Czasopismo naukowe
Tytuł :
A data-driven dimensionality-reduction algorithm for the exploration of patterns in biomedical data.
Autorzy :
Islam MT; Department of Radiation Oncology, Stanford University, Stanford, CA, USA.
Xing L; Department of Radiation Oncology, Stanford University, Stanford, CA, USA. .
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Źródło :
Nature biomedical engineering [Nat Biomed Eng] 2021 Jun; Vol. 5 (6), pp. 624-635. Date of Electronic Publication: 2020 Nov 02.
Typ publikacji :
Journal Article; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't
MeSH Terms :
Algorithms*
Datasets as Topic*
Biomedical Research/*statistics & numerical data
Multifactor Dimensionality Reduction/*statistics & numerical data
Electroencephalography/statistics & numerical data ; Humans ; Protein Biosynthesis ; Sequence Analysis, RNA/statistics & numerical data ; Single-Cell Analysis/statistics & numerical data ; Tomography, X-Ray Computed/statistics & numerical data
Czasopismo naukowe
Tytuł :
Swarm Learning for decentralized and confidential clinical machine learning.
Autorzy :
Warnat-Herresthal S; Systems Medicine, Deutsches Zentrum für Neurodegenerative Erkrankungen (DZNE), Bonn, Germany.; Genomics and Immunoregulation, Life & Medical Sciences (LIMES) Institute, University of Bonn, Bonn, Germany.
Schultze H; Hewlett Packard Enterprise, Houston, TX, USA.
Shastry KL; Hewlett Packard Enterprise, Houston, TX, USA.
Manamohan S; Hewlett Packard Enterprise, Houston, TX, USA.
Mukherjee S; Hewlett Packard Enterprise, Houston, TX, USA.
Garg V; Hewlett Packard Enterprise, Houston, TX, USA.; Mesh Dynamics, Bangalore, India.
Sarveswara R; Hewlett Packard Enterprise, Houston, TX, USA.
Händler K; Systems Medicine, Deutsches Zentrum für Neurodegenerative Erkrankungen (DZNE), Bonn, Germany.; PRECISE Platform for Single Cell Genomics and Epigenomics, Deutsches Zentrum für Neurodegenerative Erkrankungen (DZNE) and the University of Bonn, Bonn, Germany.
Pickkers P; Department of Intensive Care Medicine and Radboud Center for Infectious Diseases (RCI), Radboud University Medical Center, Nijmegen, The Netherlands.
Aziz NA; Population Health Sciences, Deutsches Zentrum für Neurodegenerative Erkrankungen (DZNE), Bonn, Germany.; Department of Neurology, Faculty of Medicine, University of Bonn, Bonn, Germany.
Ktena S; 4th Department of Internal Medicine, National and Kapodistrian University of Athens, Medical School, Athens, Greece.
Tran F; Department of Internal Medicine I, Christian-Albrechts-University and University Hospital Schleswig-Holstein, Kiel, Germany.; Institute of Clinical Molecular Biology, Christian-Albrechts-University and University Hospital Schleswig-Holstein, Kiel, Germany.
Bitzer M; Department of Internal Medicine I, University Hospital, University of Tübingen, Tübingen, Germany.
Ossowski S; Institute of Medical Genetics and Applied Genomics, University of Tübingen, Tübingen, Germany.; NGS Competence Center Tübingen, Tübingen, Germany.
Casadei N; Institute of Medical Genetics and Applied Genomics, University of Tübingen, Tübingen, Germany.; NGS Competence Center Tübingen, Tübingen, Germany.
Herr C; Department of Internal Medicine V, Saarland University Hospital, Homburg, Germany.
Petersheim D; Department of Pediatrics, Dr. von Hauner Children's Hospital, University Hospital LMU Munich, Munich, Germany.
Behrends U; Children's Hospital, Medical Faculty, Technical University Munich, Munich, Germany.
Kern F; Clinical Bioinformatics, Saarland University, Saarbrücken, Germany.
Fehlmann T; Clinical Bioinformatics, Saarland University, Saarbrücken, Germany.
Schommers P; Department I of Internal Medicine, Faculty of Medicine and University Hospital of Cologne, University of Cologne, Cologne, Germany.
Lehmann C; Department I of Internal Medicine, Faculty of Medicine and University Hospital of Cologne, University of Cologne, Cologne, Germany.; Center for Molecular Medicine Cologne (CMMC), University of Cologne, Cologne, Germany.; German Center for Infection Research (DZIF), Partner Site Bonn-Cologne, Cologne, Germany.
Augustin M; Department I of Internal Medicine, Faculty of Medicine and University Hospital of Cologne, University of Cologne, Cologne, Germany.; Center for Molecular Medicine Cologne (CMMC), University of Cologne, Cologne, Germany.; German Center for Infection Research (DZIF), Partner Site Bonn-Cologne, Cologne, Germany.
Rybniker J; Department I of Internal Medicine, Faculty of Medicine and University Hospital of Cologne, University of Cologne, Cologne, Germany.; Center for Molecular Medicine Cologne (CMMC), University of Cologne, Cologne, Germany.; German Center for Infection Research (DZIF), Partner Site Bonn-Cologne, Cologne, Germany.
Altmüller J; Cologne Center for Genomics, West German Genome Center, University of Cologne, Cologne, Germany.
Mishra N; Institute of Clinical Molecular Biology, Christian-Albrechts-University and University Hospital Schleswig-Holstein, Kiel, Germany.
Bernardes JP; Institute of Clinical Molecular Biology, Christian-Albrechts-University and University Hospital Schleswig-Holstein, Kiel, Germany.
Krämer B; Clinical Infectious Diseases, Research Center Borstel and German Center for Infection Research (DZIF), Partner Site Hamburg-Lübeck-Borstel-Riems, Borstel, Germany.
Bonaguro L; Systems Medicine, Deutsches Zentrum für Neurodegenerative Erkrankungen (DZNE), Bonn, Germany.; Genomics and Immunoregulation, Life & Medical Sciences (LIMES) Institute, University of Bonn, Bonn, Germany.
Schulte-Schrepping J; Systems Medicine, Deutsches Zentrum für Neurodegenerative Erkrankungen (DZNE), Bonn, Germany.; Genomics and Immunoregulation, Life & Medical Sciences (LIMES) Institute, University of Bonn, Bonn, Germany.
De Domenico E; Systems Medicine, Deutsches Zentrum für Neurodegenerative Erkrankungen (DZNE), Bonn, Germany.; PRECISE Platform for Single Cell Genomics and Epigenomics, Deutsches Zentrum für Neurodegenerative Erkrankungen (DZNE) and the University of Bonn, Bonn, Germany.
Siever C; Hewlett Packard Enterprise, Houston, TX, USA.
Kraut M; Systems Medicine, Deutsches Zentrum für Neurodegenerative Erkrankungen (DZNE), Bonn, Germany.; PRECISE Platform for Single Cell Genomics and Epigenomics, Deutsches Zentrum für Neurodegenerative Erkrankungen (DZNE) and the University of Bonn, Bonn, Germany.
Desai M; Hewlett Packard Enterprise, Houston, TX, USA.
Monnet B; Hewlett Packard Enterprise, Houston, TX, USA.
Saridaki M; 4th Department of Internal Medicine, National and Kapodistrian University of Athens, Medical School, Athens, Greece.
Siegel CM; Hewlett Packard Enterprise, Houston, TX, USA.
Drews A; Systems Medicine, Deutsches Zentrum für Neurodegenerative Erkrankungen (DZNE), Bonn, Germany.; PRECISE Platform for Single Cell Genomics and Epigenomics, Deutsches Zentrum für Neurodegenerative Erkrankungen (DZNE) and the University of Bonn, Bonn, Germany.
Nuesch-Germano M; Systems Medicine, Deutsches Zentrum für Neurodegenerative Erkrankungen (DZNE), Bonn, Germany.; Genomics and Immunoregulation, Life & Medical Sciences (LIMES) Institute, University of Bonn, Bonn, Germany.
Theis H; Systems Medicine, Deutsches Zentrum für Neurodegenerative Erkrankungen (DZNE), Bonn, Germany.; PRECISE Platform for Single Cell Genomics and Epigenomics, Deutsches Zentrum für Neurodegenerative Erkrankungen (DZNE) and the University of Bonn, Bonn, Germany.
Heyckendorf J; Clinical Infectious Diseases, Research Center Borstel and German Center for Infection Research (DZIF), Partner Site Hamburg-Lübeck-Borstel-Riems, Borstel, Germany.
Schreiber S; Department of Internal Medicine I, Christian-Albrechts-University and University Hospital Schleswig-Holstein, Kiel, Germany.
Kim-Hellmuth S; Department of Pediatrics, Dr. von Hauner Children's Hospital, University Hospital LMU Munich, Munich, Germany.
Nattermann J; Department of Internal Medicine I, University Hospital Bonn, Bonn, Germany.; German Center for Infection Research (DZIF), Braunschweig, Germany.
Skowasch D; Department of Internal Medicine II - Cardiology/Pneumology, University of Bonn, Bonn, Germany.
Kurth I; Institute of Human Genetics, Medical Faculty, RWTH Aachen University, Aachen, Germany.
Keller A; Clinical Bioinformatics, Saarland University, Saarbrücken, Germany.; Department of Neurology and Neurological Sciences, Stanford University School of Medicine, Stanford, CA, USA.
Bals R; Department of Internal Medicine V, Saarland University Hospital, Homburg, Germany.
Nürnberg P; Cologne Center for Genomics, West German Genome Center, University of Cologne, Cologne, Germany.
Rieß O; Institute of Medical Genetics and Applied Genomics, University of Tübingen, Tübingen, Germany.; NGS Competence Center Tübingen, Tübingen, Germany.
Rosenstiel P; Institute of Clinical Molecular Biology, Christian-Albrechts-University and University Hospital Schleswig-Holstein, Kiel, Germany.
Netea MG; Department of Internal Medicine and Radboud Center for Infectious Diseases (RCI), Radboud University Medical Center, Nijmegen, The Netherlands.; Immunology & Metabolism, Life and Medical Sciences (LIMES) Institute, University of Bonn, Bonn, Germany.
Theis F; Institute of Computational Biology, Helmholtz Center Munich (HMGU), Neuherberg, Germany.
Mukherjee S; Statistics and Machine Learning, Deutsches Zentrum für Neurodegenerative Erkrankungen (DZNE), Bonn, Germany.
Backes M; CISPA Helmholtz Center for Information Security, Saarbrücken, Germany.
Aschenbrenner AC; Systems Medicine, Deutsches Zentrum für Neurodegenerative Erkrankungen (DZNE), Bonn, Germany.; Genomics and Immunoregulation, Life & Medical Sciences (LIMES) Institute, University of Bonn, Bonn, Germany.; PRECISE Platform for Single Cell Genomics and Epigenomics, Deutsches Zentrum für Neurodegenerative Erkrankungen (DZNE) and the University of Bonn, Bonn, Germany.; Department of Internal Medicine and Radboud Center for Infectious Diseases (RCI), Radboud University Medical Center, Nijmegen, The Netherlands.
Ulas T; Systems Medicine, Deutsches Zentrum für Neurodegenerative Erkrankungen (DZNE), Bonn, Germany.; Genomics and Immunoregulation, Life & Medical Sciences (LIMES) Institute, University of Bonn, Bonn, Germany.
Breteler MMB; Population Health Sciences, Deutsches Zentrum für Neurodegenerative Erkrankungen (DZNE), Bonn, Germany.; Institute for Medical Biometry, Informatics and Epidemiology (IMBIE), Faculty of Medicine, University of Bonn, Bonn, Germany.
Giamarellos-Bourboulis EJ; 4th Department of Internal Medicine, National and Kapodistrian University of Athens, Medical School, Athens, Greece.
Kox M; Department of Intensive Care Medicine and Radboud Center for Infectious Diseases (RCI), Radboud University Medical Center, Nijmegen, The Netherlands.
Becker M; Systems Medicine, Deutsches Zentrum für Neurodegenerative Erkrankungen (DZNE), Bonn, Germany.; PRECISE Platform for Single Cell Genomics and Epigenomics, Deutsches Zentrum für Neurodegenerative Erkrankungen (DZNE) and the University of Bonn, Bonn, Germany.
Cheran S; Hewlett Packard Enterprise, Houston, TX, USA.
Woodacre MS; Hewlett Packard Enterprise, Houston, TX, USA.
Goh EL; Hewlett Packard Enterprise, Houston, TX, USA.
Schultze JL; Systems Medicine, Deutsches Zentrum für Neurodegenerative Erkrankungen (DZNE), Bonn, Germany. .; Genomics and Immunoregulation, Life & Medical Sciences (LIMES) Institute, University of Bonn, Bonn, Germany. .; PRECISE Platform for Single Cell Genomics and Epigenomics, Deutsches Zentrum für Neurodegenerative Erkrankungen (DZNE) and the University of Bonn, Bonn, Germany. .
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Corporate Authors :
COVID-19 Aachen Study (COVAS)
Deutsche COVID-19 Omics Initiative (DeCOI)
Źródło :
Nature [Nature] 2021 Jun; Vol. 594 (7862), pp. 265-270. Date of Electronic Publication: 2021 May 26.
Typ publikacji :
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms :
Blockchain*
Confidentiality*
Datasets as Topic*
Machine Learning*/trends
Clinical Decision-Making/*methods
Precision Medicine/*methods
COVID-19/diagnosis ; COVID-19/epidemiology ; Disease Outbreaks ; Female ; Humans ; Leukemia/diagnosis ; Leukemia/pathology ; Leukocytes/pathology ; Lung Diseases/diagnosis ; Male ; Software ; Tuberculosis/diagnosis
Czasopismo naukowe
Tytuł :
A deep learning algorithm for 3D cell detection in whole mouse brain image datasets.
Autorzy :
Tyson AL; Sainsbury Wellcome Centre, University College London, London, United Kingdom.
Rousseau CV; Sainsbury Wellcome Centre, University College London, London, United Kingdom.
Niedworok CJ; Sainsbury Wellcome Centre, University College London, London, United Kingdom.
Keshavarzi S; Sainsbury Wellcome Centre, University College London, London, United Kingdom.
Tsitoura C; Sainsbury Wellcome Centre, University College London, London, United Kingdom.
Cossell L; Sainsbury Wellcome Centre, University College London, London, United Kingdom.
Strom M; Sainsbury Wellcome Centre, University College London, London, United Kingdom.
Margrie TW; Sainsbury Wellcome Centre, University College London, London, United Kingdom.
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Źródło :
PLoS computational biology [PLoS Comput Biol] 2021 May 28; Vol. 17 (5), pp. e1009074. Date of Electronic Publication: 2021 May 28 (Print Publication: 2021).
Typ publikacji :
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms :
Algorithms*
Datasets as Topic*
Deep Learning*
Brain/*diagnostic imaging
Animals ; Brain/cytology ; Mice
Czasopismo naukowe
Tytuł :
The Finnish Biodiversity Information Facility as a best-practice model for biodiversity data infrastructures.
Autorzy :
Schulman L; Biodiversity Informatics Unit, Finnish Museum of Natural History 'Luomus', University of Helsinki, P.O. Box 17, FI-00014, Helsinki, Finland. .; Finnish Environment Institute SYKE, Latokartanonkaari 11, FI-00790, Helsinki, Finland. .
Lahti K; Biodiversity Informatics Unit, Finnish Museum of Natural History 'Luomus', University of Helsinki, P.O. Box 17, FI-00014, Helsinki, Finland.
Piirainen E; Biodiversity Informatics Unit, Finnish Museum of Natural History 'Luomus', University of Helsinki, P.O. Box 17, FI-00014, Helsinki, Finland.
Heikkinen M; Biodiversity Informatics Unit, Finnish Museum of Natural History 'Luomus', University of Helsinki, P.O. Box 17, FI-00014, Helsinki, Finland.
Raitio O; Biodiversity Informatics Unit, Finnish Museum of Natural History 'Luomus', University of Helsinki, P.O. Box 17, FI-00014, Helsinki, Finland.
Juslén A; Zoology Unit, Finnish Museum of Natural History 'Luomus', University of Helsinki, P.O. Box 17, FI-00014, Helsinki, Finland.
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Źródło :
Scientific data [Sci Data] 2021 May 25; Vol. 8 (1), pp. 137. Date of Electronic Publication: 2021 May 25.
Typ publikacji :
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms :
Biodiversity*
Datasets as Topic*
Information Dissemination*
Animals ; Finland
Czasopismo naukowe
Tytuł :
VCF2CAPS-A high-throughput CAPS marker design from VCF files and its test-use on a genotyping-by-sequencing (GBS) dataset.
Autorzy :
Wesołowski W; Department of Plant Biology and Biotechnology, Faculty of Biotechnology and Horticulture, University of Agriculture in Krakow, Krakow, Poland.
Domnicz B; Department of Plant Biology and Biotechnology, Faculty of Biotechnology and Horticulture, University of Agriculture in Krakow, Krakow, Poland.
Augustynowicz J; Department of Botany, Physiology and Plant Protection, Faculty of Biotechnology and Horticulture, University of Agriculture in Krakow, Krakow, Poland.
Szklarczyk M; Department of Plant Biology and Biotechnology, Faculty of Biotechnology and Horticulture, University of Agriculture in Krakow, Krakow, Poland.
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Źródło :
PLoS computational biology [PLoS Comput Biol] 2021 May 20; Vol. 17 (5), pp. e1008980. Date of Electronic Publication: 2021 May 20 (Print Publication: 2021).
Typ publikacji :
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms :
Datasets as Topic*
Genotype*
High-Throughput Nucleotide Sequencing/*methods
Genetic Markers ; Molecular Diagnostic Techniques ; Software
Czasopismo naukowe
Tytuł :
covid19census: U.S. and Italy COVID-19 metrics and other epidemiological data.
Autorzy :
Zanettini C; Department of Pathology and Laboratory Medicine, Weill Cornell Medicine, 1300 York Avenue, New York, NY 10065, USA.
Omar M; Department of Pathology and Laboratory Medicine, Weill Cornell Medicine, 1300 York Avenue, New York, NY 10065, USA.
Dinalankara W; Department of Pathology and Laboratory Medicine, Weill Cornell Medicine, 1300 York Avenue, New York, NY 10065, USA.
Imada EL; Department of Pathology and Laboratory Medicine, Weill Cornell Medicine, 1300 York Avenue, New York, NY 10065, USA.
Colantuoni E; Department of Biostatistics, Johns Hopkins University, 615 N Wolfe St, Baltimore, MD 21205, USA.
Parmigiani G; Department of Data Sciences, Dana-Farber Cancer Institute, 450 Brookline Avenue, Boston, MA 02215, USA.; Department of Biostatistics, Harvard T.H. Chan School of Public Health, 677 Huntington Ave, Boston, MA 02115, USA.
Marchionni L; Department of Pathology and Laboratory Medicine, Weill Cornell Medicine, 1300 York Avenue, New York, NY 10065, USA.
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Źródło :
Database : the journal of biological databases and curation [Database (Oxford)] 2021 May 15; Vol. 2021.
Typ publikacji :
Journal Article; Research Support, N.I.H., Extramural
MeSH Terms :
Databases, Factual*
Datasets as Topic*
Pandemics*
SARS-CoV-2*
COVID-19/*epidemiology
Algorithms ; Comorbidity ; Demography ; Diabetes Mellitus/mortality ; Health Surveys ; Humans ; Italy/epidemiology ; Models, Theoretical ; Software ; United States/epidemiology
Czasopismo naukowe
Tytuł :
Beyond Tripeptides Two-Step Active Machine Learning for Very Large Data sets.
Autorzy :
van Teijlingen A; Department of Chemistry, University of Strathclyde, 295 Cathedral Street, Glasgow G1 1XL, U.K.
Tuttle T; Department of Chemistry, University of Strathclyde, 295 Cathedral Street, Glasgow G1 1XL, U.K.
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Źródło :
Journal of chemical theory and computation [J Chem Theory Comput] 2021 May 11; Vol. 17 (5), pp. 3221-3232. Date of Electronic Publication: 2021 Apr 27.
Typ publikacji :
Journal Article
MeSH Terms :
Datasets as Topic*
Supervised Machine Learning*
Nanostructures/*chemistry
Oligopeptides/*chemistry
Algorithms ; Computational Chemistry ; Programming Languages ; Protein Conformation
Czasopismo naukowe
Tytuł :
Estimation of non-additive genetic variance in human complex traits from a large sample of unrelated individuals.
Autorzy :
Hivert V; Institute for Molecular Bioscience, The University of Queensland, Brisbane, QLD 4072, Australia.
Sidorenko J; Institute for Molecular Bioscience, The University of Queensland, Brisbane, QLD 4072, Australia.
Rohart F; Institute for Molecular Bioscience, The University of Queensland, Brisbane, QLD 4072, Australia.
Goddard ME; Agriculture Victoria Research, AgriBio, 5 Ring Road, Bundoora, VIC 3083, Australia; Faculty of Veterinary & Agricultural Science, University of Melbourne, Parkville, VIC 3010, Australia.
Yang J; Institute for Molecular Bioscience, The University of Queensland, Brisbane, QLD 4072, Australia; School of Life Sciences, Westlake University, Hangzhou, Zhejiang 310024, China.
Wray NR; Institute for Molecular Bioscience, The University of Queensland, Brisbane, QLD 4072, Australia; Queensland Brain Institute, The University of Queensland, Brisbane, QLD 4072, Australia.
Yengo L; Institute for Molecular Bioscience, The University of Queensland, Brisbane, QLD 4072, Australia.
Visscher PM; Institute for Molecular Bioscience, The University of Queensland, Brisbane, QLD 4072, Australia. Electronic address: .
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Źródło :
American journal of human genetics [Am J Hum Genet] 2021 May 06; Vol. 108 (5), pp. 786-798. Date of Electronic Publication: 2021 Apr 02.
Typ publikacji :
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms :
Datasets as Topic*
Multifactorial Inheritance/*genetics
Polymorphism, Single Nucleotide/*genetics
Biological Specimen Banks ; Epistasis, Genetic ; Female ; Genotype ; Humans ; Male ; Models, Genetic ; Phenotype ; Reproducibility of Results ; United Kingdom
Czasopismo naukowe
Tytuł :
Quantifying the contribution of dominance deviation effects to complex trait variation in biobank-scale data.
Autorzy :
Pazokitoroudi A; Department of Computer Science, UCLA, Los Angeles, CA 90095, USA.
Chiu AM; Bioinformatics Interdepartmental Program, UCLA, Los Angeles, CA 90095, USA.
Burch KS; Bioinformatics Interdepartmental Program, UCLA, Los Angeles, CA 90095, USA.
Pasaniuc B; Department of Pathology and Laboratory Medicine, David Geffen School of Medicine, UCLA, Los Angeles, CA 90095, USA; Department of Human Genetics, David Geffen School of Medicine, UCLA, Los Angeles, CA 90095, USA; Department of Computational Medicine, David Geffen School of Medicine, UCLA, Los Angeles, CA 90095, USA.
Sankararaman S; Department of Computer Science, UCLA, Los Angeles, CA 90095, USA; Department of Human Genetics, David Geffen School of Medicine, UCLA, Los Angeles, CA 90095, USA; Department of Computational Medicine, David Geffen School of Medicine, UCLA, Los Angeles, CA 90095, USA. Electronic address: .
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Źródło :
American journal of human genetics [Am J Hum Genet] 2021 May 06; Vol. 108 (5), pp. 799-808. Date of Electronic Publication: 2021 Apr 02.
Typ publikacji :
Journal Article; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't; Research Support, U.S. Gov't, Non-P.H.S.
MeSH Terms :
Biological Specimen Banks*
Datasets as Topic*
Genetic Variation*
Genes, Dominant/*genetics
Multifactorial Inheritance/*genetics
Female ; Humans ; Male ; Models, Genetic ; Polymorphism, Single Nucleotide/genetics
Czasopismo naukowe
Tytuł :
The nurse COVID and historical epidemics literature repository: Development, description, and summary.
Autorzy :
Loresto FL Jr; Division of Patient Care Services, Children's Hospital Colorado, Aurora, CO; University of Colorado College of Nursing, CU Anschutz, Aurora, CO. Electronic address: .
Nunez L; Preventive Medicine and Community Health, University of Texas Medical Branch, Galveston, TX.
Tarasenko L; Division of Patient Care Services, Children's Hospital Colorado, Aurora, CO; University of Colorado College of Nursing, CU Anschutz, Aurora, CO.
Pierre MS; Division of Patient Care Services, Children's Hospital Colorado, Aurora, CO.
Oja K; Nursing Education and Research, Denver Health, Denver, CO.
Mueller M; Division of Patient Care Services, Children's Hospital Colorado, Aurora, CO.
Switzer B; Division of Patient Care Services, Children's Hospital Colorado, Aurora, CO.
Marroquin K; Division of Patient Care Services, Children's Hospital Colorado, Aurora, CO.
Kleiner C; Division of Patient Care Services, Children's Hospital Colorado, Aurora, CO; University of Colorado College of Nursing, CU Anschutz, Aurora, CO.
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Źródło :
Nursing outlook [Nurs Outlook] 2021 May-Jun; Vol. 69 (3), pp. 257-264. Date of Electronic Publication: 2021 Jan 30.
Typ publikacji :
Historical Article; Journal Article
MeSH Terms :
COVID-19*/diagnosis
COVID-19*/therapy
Data Mining*
Datasets as Topic*
Nursing Research*
Program Development*
Publications/*history
Epidemics/history ; Evidence-Based Nursing ; History, 20th Century ; History, 21st Century ; Humans
Czasopismo naukowe
Tytuł :
A powerful subset-based method identifies gene set associations and improves interpretation in UK Biobank.
Autorzy :
Dutta D; Center for Statistical Genetics, University of Michigan, Ann Arbor, MI 48109, USA; Department of Biostatistics, University of Michigan, Ann Arbor, MI 48109, USA; Department of Biostatistics, Johns Hopkins University, Baltimore, MD 21205, USA.
VandeHaar P; Center for Statistical Genetics, University of Michigan, Ann Arbor, MI 48109, USA; Department of Biostatistics, University of Michigan, Ann Arbor, MI 48109, USA.
Fritsche LG; Center for Statistical Genetics, University of Michigan, Ann Arbor, MI 48109, USA; Department of Biostatistics, University of Michigan, Ann Arbor, MI 48109, USA.
Zöllner S; Center for Statistical Genetics, University of Michigan, Ann Arbor, MI 48109, USA; Department of Biostatistics, University of Michigan, Ann Arbor, MI 48109, USA.
Boehnke M; Center for Statistical Genetics, University of Michigan, Ann Arbor, MI 48109, USA; Department of Biostatistics, University of Michigan, Ann Arbor, MI 48109, USA.
Scott LJ; Center for Statistical Genetics, University of Michigan, Ann Arbor, MI 48109, USA; Department of Biostatistics, University of Michigan, Ann Arbor, MI 48109, USA.
Lee S; Center for Statistical Genetics, University of Michigan, Ann Arbor, MI 48109, USA; Department of Biostatistics, University of Michigan, Ann Arbor, MI 48109, USA; Graduate School of Data Science, Seoul National University, Seoul 08826, Republic of Korea. Electronic address: .
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Źródło :
American journal of human genetics [Am J Hum Genet] 2021 Apr 01; Vol. 108 (4), pp. 669-681. Date of Electronic Publication: 2021 Mar 16.
Typ publikacji :
Journal Article; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't
MeSH Terms :
Biological Specimen Banks*
Data Interpretation, Statistical*
Databases, Genetic*
Datasets as Topic*
Phenotype*
Genome-Wide Association Study/*methods
ATP-Binding Cassette Transporters/genetics ; Computer Simulation ; Gene Expression/genetics ; Humans ; Research Design ; Time Factors ; United Kingdom ; Web Browser
Czasopismo naukowe
Tytuł :
Automated Lateral Ventricular and Cranial Vault Volume Measurements in 13,851 Patients Using Deep Learning Algorithms.
Autorzy :
Maragkos GA; Neurosurgery Service, Beth Israel Deaconess Medical Center, Harvard Medical School, Boston, Massachusetts, USA.
Filippidis AS; Neurosurgery Service, Beth Israel Deaconess Medical Center, Harvard Medical School, Boston, Massachusetts, USA.
Chilamkurthy S; Qure.ai, Mumbai, India.
Salem MM; Neurosurgery Service, Beth Israel Deaconess Medical Center, Harvard Medical School, Boston, Massachusetts, USA.
Tanamala S; Qure.ai, Mumbai, India.
Gomez-Paz S; Neurosurgery Service, Beth Israel Deaconess Medical Center, Harvard Medical School, Boston, Massachusetts, USA.
Rao P; Qure.ai, Mumbai, India.
Moore JM; Neurosurgery Service, Beth Israel Deaconess Medical Center, Harvard Medical School, Boston, Massachusetts, USA.
Papavassiliou E; Neurosurgery Service, Beth Israel Deaconess Medical Center, Harvard Medical School, Boston, Massachusetts, USA.
Hackney D; Radiology Department, Beth Israel Deaconess Medical Center, Harvard Medical School, Boston, Massachusetts, USA.
Thomas AJ; Neurosurgery Service, Beth Israel Deaconess Medical Center, Harvard Medical School, Boston, Massachusetts, USA. Electronic address: .
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Źródło :
World neurosurgery [World Neurosurg] 2021 Apr; Vol. 148, pp. e363-e373. Date of Electronic Publication: 2021 Jan 06.
Typ publikacji :
Journal Article
MeSH Terms :
Algorithms*
Datasets as Topic*
Deep Learning*
Cephalometry/*methods
Lateral Ventricles/*anatomy & histology
Skull/*anatomy & histology
Adolescent ; Adult ; Aged ; Aged, 80 and over ; Atrophy ; Brain/pathology ; Child ; Child, Preschool ; Cross-Sectional Studies ; Female ; Humans ; Hydrocephalus/diagnostic imaging ; Hydrocephalus/pathology ; Lateral Ventricles/diagnostic imaging ; Lateral Ventricles/pathology ; Male ; Middle Aged ; Models, Biological ; Natural Language Processing ; Neuroimaging ; Retrospective Studies ; Skull/diagnostic imaging ; Skull/pathology ; Tomography, X-Ray Computed ; Young Adult
Czasopismo naukowe
Tytuł :
How do we share data in COVID-19 research? A systematic review of COVID-19 datasets in PubMed Central Articles.
Autorzy :
Zuo X; School of Biomedical Informatics, The University of Texas Health Science Center at Houston.
Chen Y; University of Pennsylvania.
Ohno-Machado L; University of California San Diego.
Xu H; School of Biomedical Informatics, The University of Texas Health Science Center at Houston.
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Źródło :
Briefings in bioinformatics [Brief Bioinform] 2021 Mar 22; Vol. 22 (2), pp. 800-811.
Typ publikacji :
Journal Article; Research Support, Non-U.S. Gov't; Systematic Review
MeSH Terms :
Datasets as Topic*
PubMed*
COVID-19/*epidemiology
Information Dissemination/*methods
SARS-CoV-2/*isolation & purification
Humans
Czasopismo naukowe
Tytuł :
Imaging modalities to inform the detection and diagnosis of early caries.
Autorzy :
Walsh T; Division of Dentistry, School of Medical Sciences, Faculty of Biology, Medicine and Health, The University of Manchester, Manchester, UK.
Macey R; Division of Dentistry, School of Medical Sciences, Faculty of Biology, Medicine and Health, The University of Manchester, Manchester, UK.
Riley P; Cochrane Oral Health, Division of Dentistry, School of Medical Sciences, Faculty of Biology, Medicine and Health, The University of Manchester, Manchester, UK.
Glenny AM; Division of Dentistry, School of Medical Sciences, Faculty of Biology, Medicine and Health, The University of Manchester, Manchester, UK.
Schwendicke F; Department of Oral Diagnostics, Digital Health and Heatlh Research Services, Charité - Universitätsmedizin Berlin, Berlin, Germany.
Worthington HV; Cochrane Oral Health, Division of Dentistry, School of Medical Sciences, Faculty of Biology, Medicine and Health, The University of Manchester, Manchester, UK.
Clarkson JE; Division of Oral Health Sciences, Dundee Dental School, University of Dundee, Dundee, UK.
Ricketts D; Dundee Dental School, University of Dundee, Dundee, UK.
Su TL; Division of Dentistry, School of Medical Sciences, Faculty of Biology, Medicine and Health, The University of Manchester, Manchester, UK.
Sengupta A; Division of Dentistry, School of Medical Sciences, Faculty of Biology, Medicine and Health, The University of Manchester, Manchester, UK.
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Źródło :
The Cochrane database of systematic reviews [Cochrane Database Syst Rev] 2021 Mar 15; Vol. 3. Cochrane AN: CD014545. Date of Electronic Publication: 2021 Mar 15.
Typ publikacji :
Journal Article; Meta-Analysis; Research Support, Non-U.S. Gov't; Systematic Review
MeSH Terms :
Cone-Beam Computed Tomography*/statistics & numerical data
Datasets as Topic*
Dental Caries/*diagnostic imaging
Radiography, Dental/*methods
Adult ; Bias ; Child ; Dentition, Permanent ; False Negative Reactions ; False Positive Reactions ; Humans ; Radiography, Dental/statistics & numerical data ; Radiography, Dental, Digital/statistics & numerical data ; Reference Standards ; Sensitivity and Specificity ; Tooth, Deciduous
Czasopismo naukowe
Tytuł :
TCRMatch: Predicting T-Cell Receptor Specificity Based on Sequence Similarity to Previously Characterized Receptors.
Autorzy :
Chronister WD; La Jolla Institute for Allergy and Immunology, La Jolla, CA, United States.
Crinklaw A; La Jolla Institute for Allergy and Immunology, La Jolla, CA, United States.
Mahajan S; La Jolla Institute for Allergy and Immunology, La Jolla, CA, United States.
Vita R; La Jolla Institute for Allergy and Immunology, La Jolla, CA, United States.
Koşaloğlu-Yalçın Z; La Jolla Institute for Allergy and Immunology, La Jolla, CA, United States.
Yan Z; La Jolla Institute for Allergy and Immunology, La Jolla, CA, United States.
Greenbaum JA; La Jolla Institute for Allergy and Immunology, La Jolla, CA, United States.
Jessen LE; Department of Health Technology, Section for Bioinformatics, Technical University of Denmark, Lyngby, Denmark.
Nielsen M; Department of Health Technology, Section for Bioinformatics, Technical University of Denmark, Lyngby, Denmark.; Instituto de Investigaciones Biotecnológicas, Universidad Nacional de San Martín, San Martín, Argentina.
Christley S; Department of Population and Data Sciences, UT Southwestern Medical Center, Dallas, TX, United States.
Cowell LG; Department of Population and Data Sciences, UT Southwestern Medical Center, Dallas, TX, United States.
Sette A; La Jolla Institute for Allergy and Immunology, La Jolla, CA, United States.; Department of Medicine, University of California, San Diego, San Diego, CA, United States.
Peters B; La Jolla Institute for Allergy and Immunology, La Jolla, CA, United States.; Department of Medicine, University of California, San Diego, San Diego, CA, United States.
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Źródło :
Frontiers in immunology [Front Immunol] 2021 Mar 11; Vol. 12, pp. 640725. Date of Electronic Publication: 2021 Mar 11 (Print Publication: 2021).
Typ publikacji :
Journal Article; Research Support, N.I.H., Extramural
MeSH Terms :
Algorithms*
Datasets as Topic*
Epitopes, T-Lymphocyte*
Receptors, Antigen, T-Cell*
T-Cell Antigen Receptor Specificity*
Humans ; Internet
Czasopismo naukowe
Tytuł :
Deep learning-based unlearning of dataset bias for MRI harmonisation and confound removal.
Autorzy :
Dinsdale NK; Wellcome Centre for Integrative Neuroimaging, FMRIB, Nuffield Department of Clinical Neurosciences, University of Oxford, UK. Electronic address: .
Jenkinson M; Wellcome Centre for Integrative Neuroimaging, FMRIB, Nuffield Department of Clinical Neurosciences, University of Oxford, UK; Australian Institute for Machine Learning (AIML), School of Computer Science, University of Adelaide, Adelaide, Australia; South Australian Health and Medical Research Institute (SAHMRI), North Terrace, Adelaide, Australia.
Namburete AIL; Institute of Biomedical Engineering, Department of Engineering Science, University of Oxford, UK.
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Źródło :
NeuroImage [Neuroimage] 2021 Mar; Vol. 228, pp. 117689. Date of Electronic Publication: 2020 Dec 30.
Typ publikacji :
Journal Article; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't
MeSH Terms :
Datasets as Topic*
Deep Learning*
Image Processing, Computer-Assisted/*methods
Magnetic Resonance Imaging/*methods
Neuroimaging/*methods
Brain/physiology ; Humans
Czasopismo naukowe

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