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Tytuł :
Human Immunotypes Impose Selection on Viral Genotypes Through Viral Epitope Specificity.
Autorzy :
Gabrielaite M; Centre for Genomic Medicine, Copenhagen University Hospital, Copenhagen, Denmark.
Bennedbæk M; Centre of Excellence for Health, Immunity, and Infections, Department of Infectious Diseases, Rigshospitalet, University of Copenhagen, Copenhagen, Denmark.
Zucco AG; Centre of Excellence for Health, Immunity, and Infections, Department of Infectious Diseases, Rigshospitalet, University of Copenhagen, Copenhagen, Denmark.
Ekenberg C; Centre of Excellence for Health, Immunity, and Infections, Department of Infectious Diseases, Rigshospitalet, University of Copenhagen, Copenhagen, Denmark.
Murray DD; Centre of Excellence for Health, Immunity, and Infections, Department of Infectious Diseases, Rigshospitalet, University of Copenhagen, Copenhagen, Denmark.
Kan VL; Veterans Affairs Medical Center, The George Washington University School of Medicine and Health Sciences, Washington, District of Columbia, USA.
Touloumi G; Department of Hygiene, Epidemiology, and Medical Statistics, Medical School, National and Kapodistrian University of Athens, Athens, Greece.
Vandekerckhove L; HIV Cure Research Center, Department of Internal Medicine and Pediatrics, Faculty of Medicine and Health Sciences, Ghent University, Ghent University Hospital, Ghent, Belgium.
Turner D; Crusaid Kobler AIDS Center, Tel-Aviv Sourasky Medical Center, Faculty of Medicine, Tel Aviv University, Tel Aviv, Israel.
Neaton J; Division of Biostatistics, School of Public Health, University of Minnesota, Minneapolis, Minnesota, USA.
Lane HC; Division of Clinical Research, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Bethesda, Maryland, USA.
Safo S; Division of Biostatistics, School of Public Health, University of Minnesota, Minneapolis, Minnesota, USA.
Arenas-Pinto A; Medical Research Council Clinical Trials Unit, University College London, London, United Kingdom.
Polizzotto MN; Kirby Institute for Infection and Immunity, University of New South Wales, Sydney, Australia.
Günthard HF; Division of Infectious Diseases and Hospital Epidemiology, University Hospital Zürich, Zürich, Switzerland.; Institute of Medical Virology, University of Zürich, Zürich, Switzerland.
Lundgren JD; Centre of Excellence for Health, Immunity, and Infections, Department of Infectious Diseases, Rigshospitalet, University of Copenhagen, Copenhagen, Denmark.
Marvig RL; Centre for Genomic Medicine, Copenhagen University Hospital, Copenhagen, Denmark.
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Źródło :
The Journal of infectious diseases [J Infect Dis] 2021 Dec 15; Vol. 224 (12), pp. 2053-2063.
Typ publikacji :
Journal Article; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't
MeSH Terms :
Genome, Viral*
Polymorphism, Single Nucleotide*
HIV Infections/*genetics
HIV-1/*genetics
Viral Load/*genetics
Adult ; Epitopes/genetics ; Female ; Genome, Human ; Genome-Wide Association Study ; Genotype ; HIV Infections/immunology ; HIV Infections/virology ; HIV-1/immunology ; Humans ; Male ; Middle Aged ; Viral Load/immunology
Czasopismo naukowe
Tytuł :
MitoTALENs: A Method for Targeted Gene Disruption in Plant Mitochondrial Genomes.
Autorzy :
Arimura SI; Graduate School of Agricultural and Life Sciences, The University of Tokyo, Tokyo, Japan. .
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Źródło :
Methods in molecular biology (Clifton, N.J.) [Methods Mol Biol] 2022; Vol. 2363, pp. 335-340.
Typ publikacji :
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms :
Genome, Mitochondrial*/genetics
Genome, Plant/genetics ; Mitochondria/genetics ; Plants/genetics ; Transcription Activator-Like Effector Nucleases/genetics
Czasopismo naukowe
Tytuł :
Mid-pass whole genome sequencing enables biomedical genetic studies of diverse populations.
Autorzy :
Emde AK; Variant Bio Inc., Seattle, WA, USA.
Phipps-Green A; Department of Biochemistry, University of Otago, Dunedin, New Zealand.
Cadzow M; Department of Biochemistry, University of Otago, Dunedin, New Zealand.
Gallagher CS; Variant Bio Inc., Seattle, WA, USA.
Major TJ; Department of Biochemistry, University of Otago, Dunedin, New Zealand.
Merriman ME; Department of Biochemistry, University of Otago, Dunedin, New Zealand.
Topless RK; Department of Biochemistry, University of Otago, Dunedin, New Zealand.
Takei R; Department of Biochemistry, University of Otago, Dunedin, New Zealand.; Division of Clinical Immunology and Rheumatology, University of Alabama at Birmingham, Birmingham, AL, USA.
Dalbeth N; Department of Medicine, University of Auckland, Auckland, New Zealand.
Murphy R; Department of Medicine, University of Auckland, Auckland, New Zealand.
Stamp LK; University of Otago Christchurch, Christchurch, New Zealand.
de Zoysa J; Department of Medicine, University of Auckland, Auckland, New Zealand.
Wilcox PL; Department of Mathematics and Statistics, University of Otago, Dunedin, New Zealand.
Fox K; Departments of Anthropology and Global Health, University of California, San Diego, CA, USA.
Wasik KA; Variant Bio Inc., Seattle, WA, USA. .
Merriman TR; Department of Biochemistry, University of Otago, Dunedin, New Zealand. .; Division of Clinical Immunology and Rheumatology, University of Alabama at Birmingham, Birmingham, AL, USA. .
Castel SE; Variant Bio Inc., Seattle, WA, USA. .
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Źródło :
BMC genomics [BMC Genomics] 2021 Nov 01; Vol. 22 (1), pp. 666. Date of Electronic Publication: 2021 Nov 01.
Typ publikacji :
Journal Article
MeSH Terms :
Genome-Wide Association Study*
Polymorphism, Single Nucleotide*
Genome ; Genome, Human ; Genomics ; Genotype ; Humans ; Whole Genome Sequencing
Czasopismo naukowe
Tytuł :
Complete genome sequencing of SARS-CoV-2 strains: A pilot survey in Palestine reveals spike mutation H245N.
Autorzy :
Al-Jawabreh A; Department of Medical Laboratory Sciences, Faculty of Allied Health Sciences, Arab American University, Jenin, Palestine.; Leishmaniases Research Unit, Jericho, Palestine.
Ereqat S; Biochemistry and Molecular Biology Department, Faculty of Medicine, Al-Quds University, Abu Dis, East Jerusalem, Palestine. .
Dumaidi K; Department of Medical Laboratory Sciences, Faculty of Allied Health Sciences, Arab American University, Jenin, Palestine.
Al-Jawabreh H; Leishmaniases Research Unit, Jericho, Palestine.
Nasereddin A; Al-Quds Nutrition and Health Research Institute Faculty of Medicine, Al-Quds University, Abu Dis, East Jerusalem, Palestine.
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Źródło :
BMC research notes [BMC Res Notes] 2021 Dec 23; Vol. 14 (1), pp. 466. Date of Electronic Publication: 2021 Dec 23.
Typ publikacji :
Journal Article
MeSH Terms :
Genome, Viral*
SARS-CoV-2*/genetics
Spike Glycoprotein, Coronavirus/*genetics
Arabs ; COVID-19/virology ; Humans ; Middle East ; Mutation ; Phylogeny ; Pilot Projects ; Whole Genome Sequencing
Czasopismo naukowe
Tytuł :
Systems biology analysis of human genomes points to key pathways conferring spina bifida risk.
Autorzy :
Aguiar-Pulido V; Center for Neurogenetics, Feil Family Brain and Mind Research Institute, Weill Cornell Medicine, New York, NY 10021.
Wolujewicz P; Center for Neurogenetics, Feil Family Brain and Mind Research Institute, Weill Cornell Medicine, New York, NY 10021.
Martinez-Fundichely A; Department of Physiology and Biophysics, Weill Cornell Medicine, New York, NY 10065.; His Royal Highness Prince Alwaleed Bin Talal Bin Abdulaziz Al-Saud Institute for Computational Biomedicine, Weill Cornell Medicine, New York, NY 10065.
Elhaik E; Department of Biology, Lund University SE-221 00 Lund, Sweden.
Thareja G; Department of Physiology and Biophysics, Weill Cornell Medicine-Qatar, Doha, Qatar.
Abdel Aleem A; Department of Neurology, Weill Cornell Medicine-Qatar, Doha, Qatar.
Chalhoub N; Department of Neurology, Weill Cornell Medicine-Qatar, Doha, Qatar.
Cuykendall T; Department of Physiology and Biophysics, Weill Cornell Medicine, New York, NY 10065.; His Royal Highness Prince Alwaleed Bin Talal Bin Abdulaziz Al-Saud Institute for Computational Biomedicine, Weill Cornell Medicine, New York, NY 10065.
Al-Zamer J; Rehabilitation Medicine, Hamad Medical Corporation, Doha, Qatar.
Lei Y; Department of Molecular and Cellular Biology, Center for Precision Environmental Health, Baylor College of Medicine, Houston, TX 77030.
El-Bashir H; Rehabilitation Medicine, Hamad Medical Corporation, Doha, Qatar.
Musser JM; Department of Pathology and Genomic Medicine, Houston Methodist Research Institute, Houston, TX 77030.; Department of Pathology and Laboratory Medicine, Weill Cornell Medicine, New York, NY 10065.
Al-Kaabi A; Sidra Medical and Research Center, Weill Cornell Medicine-Qatar, Doha, Qatar.
Shaw GM; Department of Pediatrics, Stanford University School of Medicine, Stanford, CA 94305.
Khurana E; Department of Physiology and Biophysics, Weill Cornell Medicine, New York, NY 10065.; His Royal Highness Prince Alwaleed Bin Talal Bin Abdulaziz Al-Saud Institute for Computational Biomedicine, Weill Cornell Medicine, New York, NY 10065.
Suhre K; Department of Physiology and Biophysics, Weill Cornell Medicine-Qatar, Doha, Qatar.
Mason CE; Center for Neurogenetics, Feil Family Brain and Mind Research Institute, Weill Cornell Medicine, New York, NY 10021.; Department of Physiology and Biophysics, Weill Cornell Medicine, New York, NY 10065.; His Royal Highness Prince Alwaleed Bin Talal Bin Abdulaziz Al-Saud Institute for Computational Biomedicine, Weill Cornell Medicine, New York, NY 10065.
Elemento O; Center for Neurogenetics, Feil Family Brain and Mind Research Institute, Weill Cornell Medicine, New York, NY 10021.; Department of Physiology and Biophysics, Weill Cornell Medicine, New York, NY 10065.; His Royal Highness Prince Alwaleed Bin Talal Bin Abdulaziz Al-Saud Institute for Computational Biomedicine, Weill Cornell Medicine, New York, NY 10065.; Caryl and Israel Englander Institute for Precision Medicine, Weill Cornell Medicine, New York, NY 10021.
Finnell RH; Department of Molecular and Cellular Biology, Center for Precision Environmental Health, Baylor College of Medicine, Houston, TX 77030.; Department of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX 77030.; Department of Medicine, Baylor College of Medicine, Houston, TX 77030.
Ross ME; Center for Neurogenetics, Feil Family Brain and Mind Research Institute, Weill Cornell Medicine, New York, NY 10021; .
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Źródło :
Proceedings of the National Academy of Sciences of the United States of America [Proc Natl Acad Sci U S A] 2021 Dec 21; Vol. 118 (51).
Typ publikacji :
Journal Article; Multicenter Study; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't
MeSH Terms :
Genome, Human*
Spinal Dysraphism/*genetics
Case-Control Studies ; Genetic Predisposition to Disease ; Genome-Wide Association Study ; Humans ; Systems Biology ; Transcription Factors/genetics
Czasopismo naukowe
Tytuł :
Exploration of the Effect on Genome-Wide DNA Methylation by miR-143 Knock-Out in Mice Liver.
Autorzy :
Chen X; Guangdong Provincial Key Laboratory of Animal Nutrition Control, National Engineering Research Center for Breeding Swine Industry, College of Animal Science, South China Agricultural University, No. 483 Wushan Road, Guangzhou 510642, China.
Luo J; Guangdong Provincial Key Laboratory of Animal Nutrition Control, National Engineering Research Center for Breeding Swine Industry, College of Animal Science, South China Agricultural University, No. 483 Wushan Road, Guangzhou 510642, China.
Liu J; Guangdong Provincial Key Laboratory of Animal Nutrition Control, National Engineering Research Center for Breeding Swine Industry, College of Animal Science, South China Agricultural University, No. 483 Wushan Road, Guangzhou 510642, China.
Chen T; Guangdong Provincial Key Laboratory of Animal Nutrition Control, National Engineering Research Center for Breeding Swine Industry, College of Animal Science, South China Agricultural University, No. 483 Wushan Road, Guangzhou 510642, China.
Sun J; Guangdong Provincial Key Laboratory of Animal Nutrition Control, National Engineering Research Center for Breeding Swine Industry, College of Animal Science, South China Agricultural University, No. 483 Wushan Road, Guangzhou 510642, China.
Zhang Y; Guangdong Provincial Key Laboratory of Animal Nutrition Control, National Engineering Research Center for Breeding Swine Industry, College of Animal Science, South China Agricultural University, No. 483 Wushan Road, Guangzhou 510642, China.
Xi Q; Guangdong Provincial Key Laboratory of Animal Nutrition Control, National Engineering Research Center for Breeding Swine Industry, College of Animal Science, South China Agricultural University, No. 483 Wushan Road, Guangzhou 510642, China.
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Źródło :
International journal of molecular sciences [Int J Mol Sci] 2021 Dec 03; Vol. 22 (23). Date of Electronic Publication: 2021 Dec 03.
Typ publikacji :
Journal Article
MeSH Terms :
DNA Methylation*
Whole Genome Sequencing*
Liver/*metabolism
MicroRNAs/*metabolism
Animals ; CpG Islands ; Epigenesis, Genetic ; Epigenomics ; GC Rich Sequence ; Genome ; High-Throughput Nucleotide Sequencing ; Male ; Mice ; Mice, Knockout ; MicroRNAs/genetics ; Promoter Regions, Genetic ; Sulfites
Czasopismo naukowe
Tytuł :
Characterisation of the whole genome sequence of an avian hepatitis E virus directly from clinical specimens reveals possible recombination events between European and USA strains.
Autorzy :
Asif K; Asia-Pacific Centre for Animal Health, Department of Veterinary Biosciences, Faculty of Veterinary and Agricultural Sciences, The University of Melbourne, Werribee, Victoria, Australia. Electronic address: .
O'Rourke D; Asia-Pacific Centre for Animal Health, Department of Veterinary Biosciences, Faculty of Veterinary and Agricultural Sciences, The University of Melbourne, Werribee, Victoria, Australia.
Sabir AJ; Asia-Pacific Centre for Animal Health, Department of Veterinary Biosciences, Faculty of Veterinary and Agricultural Sciences, The University of Melbourne, Werribee, Victoria, Australia.
Shil P; Asia-Pacific Centre for Animal Health, Department of Veterinary Biosciences, Faculty of Veterinary and Agricultural Sciences, The University of Melbourne, Werribee, Victoria, Australia.
Noormohammadi AH; Asia-Pacific Centre for Animal Health, Department of Veterinary Biosciences, Faculty of Veterinary and Agricultural Sciences, The University of Melbourne, Werribee, Victoria, Australia.
Marenda MS; Asia-Pacific Centre for Animal Health, Department of Veterinary Biosciences, Faculty of Veterinary and Agricultural Sciences, The University of Melbourne, Werribee, Victoria, Australia.
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Źródło :
Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases [Infect Genet Evol] 2021 Dec; Vol. 96, pp. 105095. Date of Electronic Publication: 2021 Sep 29.
Typ publikacji :
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms :
Chickens*
Genome, Viral*
Hepatitis, Viral, Animal/*virology
Hepevirus/*genetics
Poultry Diseases/*virology
RNA Virus Infections/*veterinary
Animals ; Female ; Liver/virology ; Phylogeny ; RNA Virus Infections/virology ; Recombination, Genetic ; Whole Genome Sequencing
Czasopismo naukowe
Tytuł :
Genomic evolution and virulence association of Clostridioides difficile sequence type 37 (ribotype 017) in China.
Autorzy :
Xu X; Department of Clinical Laboratory, Women's Hospital, Zhejiang University School of Medicine, Hangzhou, People's Republic of China.; School of Laboratory Medicine, Hangzhou Medical College, Hangzhou, People's Republic of China.
Luo Y; School of Biotechnology and Biomolecular Sciences, University of New South Wales, Sydney, Australia.
Chen H; Key Laboratory of Microorganism technology and bioinformatics research of Zhejiang Province, Hangzhou, People's Republic of China.; NMPA Key Laboratory For Testing and Risk Warning of Pharmaceutical Microbiology, Hangzhou, People's Republic of China.
Song X; Centre of Laboratory Medicine, Zhejiang Provincial People's Hospital, People's Hospital of Hangzhou Medical College, Hangzhou, People's Republic of China.
Bian Q; Zhejiang Provincial Center for Disease Control and Prevention, Hangzhou, People's Republic of China.
Wang X; Department of Laboratory Medicine, Hangzhou First People's Hospital, Hangzhou, People's Republic of China.
Liang Q; Key Laboratory of Microorganism technology and bioinformatics research of Zhejiang Province, Hangzhou, People's Republic of China.; NMPA Key Laboratory For Testing and Risk Warning of Pharmaceutical Microbiology, Hangzhou, People's Republic of China.
Zhao J; Department of Clinical Microbiology, Second Hospital of Hebei Medical University, Hebei Provincial Center for Clinical Laboratories, Shijiazhuang, People's Republic of China.
Li C; Infection Control Center, Xiangya Hospital of Central South University, Changsha, People's Republic of China.
Song G; School of Laboratory Medicine, Hangzhou Medical College, Hangzhou, People's Republic of China.
Yang J; School of Laboratory Medicine, Hangzhou Medical College, Hangzhou, People's Republic of China.
Sun L; Key Laboratory of Microorganism technology and bioinformatics research of Zhejiang Province, Hangzhou, People's Republic of China.; NMPA Key Laboratory For Testing and Risk Warning of Pharmaceutical Microbiology, Hangzhou, People's Republic of China.
Jiang J; Zhejiang Provincial Center for Disease Control and Prevention, Hangzhou, People's Republic of China.
Wang H; Key Laboratory of Microorganism technology and bioinformatics research of Zhejiang Province, Hangzhou, People's Republic of China.; NMPA Key Laboratory For Testing and Risk Warning of Pharmaceutical Microbiology, Hangzhou, People's Republic of China.
Zhu B; Department of Clinical Laboratory, Women's Hospital, Zhejiang University School of Medicine, Hangzhou, People's Republic of China.
Ye G; Department of Clinical Laboratory, Women's Hospital, Zhejiang University School of Medicine, Hangzhou, People's Republic of China.
Chen L; Center for Discovery and Innovation, Hackensack Meridian Health, Nutley, NJ, USA.; Department of Medical Sciences, Hackensack Meridian School of Medicine, Nutley, NJ, USA.
Tang YW; Cepheid, Danaher Diagnostic Platform, Shanghai, People's Republic of China.
Jin D; School of Laboratory Medicine, Hangzhou Medical College, Hangzhou, People's Republic of China.; Centre of Laboratory Medicine, Zhejiang Provincial People's Hospital, People's Hospital of Hangzhou Medical College, Hangzhou, People's Republic of China.
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Źródło :
Emerging microbes & infections [Emerg Microbes Infect] 2021 Dec; Vol. 10 (1), pp. 1331-1345.
Typ publikacji :
Journal Article
MeSH Terms :
Evolution, Molecular*
Genome, Bacterial*
Clostridioides difficile/*genetics
Clostridioides difficile/*pathogenicity
Clostridium Infections/*microbiology
Anti-Bacterial Agents/pharmacology ; Bacterial Toxins/genetics ; Bacterial Toxins/metabolism ; China/epidemiology ; Clostridioides difficile/classification ; Clostridioides difficile/physiology ; Clostridium Infections/epidemiology ; Clostridium Infections/transmission ; Drug Resistance, Bacterial/genetics ; Female ; Humans ; Male ; Metabolic Networks and Pathways/genetics ; Mutation ; Phylogeny ; Ribotyping ; Severity of Illness Index ; Spores, Bacterial/physiology ; Virulence/genetics ; Whole Genome Sequencing
Czasopismo naukowe
Tytuł :
Whole-genome analysis of SARS-CoV-2 samples indicate no tissue specific genetic adaptation of the virus in COVID-19 patients' upper and lower respiratory tract.
Autorzy :
Wylezich C; Institute of Diagnostic Virology, Friedrich-Loeffler-Institut, Federal Research Institute for Animal Health, Greifswald-Insel Riems, Germany. Electronic address: .
Schaller T; Department of General Pathology and Molecular Diagnostics, University of Augsburg, Augsburg, Germany.
Claus R; Department of Hematology and Oncology, University of Augsburg, Augsburg, Germany.
Hirschbühl K; Department of Hematology and Oncology, University of Augsburg, Augsburg, Germany.
Märkl B; Department of General Pathology and Molecular Diagnostics, University of Augsburg, Augsburg, Germany.
Kling E; Department of Microbiology, University of Augsburg, Augsburg, Germany.
Spring O; Anesthesiology and Operative Intensive Care Medicine,University of Augsburg, Augsburg, Germany.
Höper D; Institute of Diagnostic Virology, Friedrich-Loeffler-Institut, Federal Research Institute for Animal Health, Greifswald-Insel Riems, Germany.
Schlegel J; Department of Neuropathology, School of Medicine, Institute of Pathology, Technical University Munich, Munich, Germany.
Beer M; Institute of Diagnostic Virology, Friedrich-Loeffler-Institut, Federal Research Institute for Animal Health, Greifswald-Insel Riems, Germany.
Dintner S; Department of General Pathology and Molecular Diagnostics, University of Augsburg, Augsburg, Germany.
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Źródło :
Diagnostic microbiology and infectious disease [Diagn Microbiol Infect Dis] 2021 Dec; Vol. 101 (4), pp. 115520. Date of Electronic Publication: 2021 Aug 20.
Typ publikacji :
Case Reports
MeSH Terms :
Whole Genome Sequencing*
Adaptation, Physiological/*genetics
COVID-19/*virology
Respiratory System/*virology
SARS-CoV-2/*isolation & purification
Genome, Viral ; Humans ; Retrospective Studies ; Tissue Distribution
Raport
Tytuł :
Genomic characterization of carbapenem-non-susceptible Pseudomonas aeruginosa in Singapore.
Autorzy :
Teo JQ; Department of Pharmacy, Singapore General Hospital, Singapore, Singapore.; Saw Swee Hock School of Public Health, National University of Singapore and National University Health System, Singapore, Singapore.
Tang CY; Saw Swee Hock School of Public Health, National University of Singapore and National University Health System, Singapore, Singapore.
Lim JC; Department of Pharmacy, National University of Singapore, Singapore, Singapore.
Lee SJ; Department of Pharmacy, Singapore General Hospital, Singapore, Singapore.
Tan SH; Department of Pharmacy, Singapore General Hospital, Singapore, Singapore.
Koh TH; Department of Microbiology, Singapore General Hospital, Singapore, Singapore.
Sim JH; Department of Microbiology, Singapore General Hospital, Singapore, Singapore.
Tan TT; Department of Infectious Diseases, Singapore General Hospital, Singapore, Singapore.; Singhealth Duke-NUS Medicine Academic Clinical Programme, Singapore, Singapore.
Kwa AL; Department of Pharmacy, Singapore General Hospital, Singapore, Singapore.; Singhealth Duke-NUS Medicine Academic Clinical Programme, Singapore, Singapore.; Emerging Infectious Diseases, Duke-National University of Singapore Medical School, Singapore, Singapore.
Ong RT; Saw Swee Hock School of Public Health, National University of Singapore and National University Health System, Singapore, Singapore.
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Źródło :
Emerging microbes & infections [Emerg Microbes Infect] 2021 Dec; Vol. 10 (1), pp. 1706-1716.
Typ publikacji :
Journal Article
MeSH Terms :
Genome, Bacterial*
Anti-Bacterial Agents/*pharmacology
Carbapenems/*pharmacology
Genomics/*methods
Pseudomonas aeruginosa/*drug effects
Pseudomonas aeruginosa/*genetics
Bacterial Typing Techniques ; Drug Resistance, Bacterial ; Humans ; Microbial Sensitivity Tests ; Multilocus Sequence Typing ; Prospective Studies ; Pseudomonas aeruginosa/classification ; Singapore ; Whole Genome Sequencing
Czasopismo naukowe
Tytuł :
Identification of candidate genes and enriched biological functions for feed efficiency traits by integrating plasma metabolites and imputed whole genome sequence variants in beef cattle.
Autorzy :
Li J; Department of Agriculture, Food & Nutritional Science, University of Alberta, T6G 2P5, Edmonton, Alberta, Canada.
Mukiibi R; The Roslin Institute and Royal (Dick) School of Veterinary Studies, University of Edinburgh, Edinburgh, Scotland, UK.
Wang Y; Department of Agriculture, Food & Nutritional Science, University of Alberta, T6G 2P5, Edmonton, Alberta, Canada.; Lacombe Research and Development Centre, Agriculture and Agri-Food Canada, 6000 C&E Trail, Alberta, T4L 1W1, Lacombe, Canada.
Plastow GS; Department of Agriculture, Food & Nutritional Science, University of Alberta, T6G 2P5, Edmonton, Alberta, Canada. .
Li C; Department of Agriculture, Food & Nutritional Science, University of Alberta, T6G 2P5, Edmonton, Alberta, Canada. .; Lacombe Research and Development Centre, Agriculture and Agri-Food Canada, 6000 C&E Trail, Alberta, T4L 1W1, Lacombe, Canada. .
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Źródło :
BMC genomics [BMC Genomics] 2021 Nov 15; Vol. 22 (1), pp. 823. Date of Electronic Publication: 2021 Nov 15.
Typ publikacji :
Journal Article
MeSH Terms :
Animal Feed*/analysis
Genome-Wide Association Study*
Animals ; Cattle ; Eating ; Genome ; Phenotype
Czasopismo naukowe
Tytuł :
Evolutionary history and pan-genome dynamics of strawberry ( Fragaria spp.).
Autorzy :
Qiao Q; School of Agriculture, Yunnan University, Kunming 650091, China.
Edger PP; Department of Horticulture, Michigan State University, East Lansing, MI 48823; .
Xue L; College of Horticulture, Shenyang Agricultural University, Shenyang 110866, China.
Qiong; Research Center for Ecology, College of Science, Tibet University, Lhasa 850000, China.
Lu J; School of Agriculture, Yunnan University, Kunming 650091, China.
Zhang Y; School of Agriculture, Yunnan University, Kunming 650091, China.
Cao Q; School of Agriculture, Yunnan University, Kunming 650091, China.
Yocca AE; Department of Horticulture, Michigan State University, East Lansing, MI 48823.; Department of Plant Biology, Michigan State University, East Lansing, MI 48823.
Platts AE; Department of Horticulture, Michigan State University, East Lansing, MI 48823.
Knapp SJ; Department of Plant Sciences, University of California, Davis, CA 95616.
Van Montagu M; Department of Plant Biotechnology and Bioinformatics, Ghent University 9052 Ghent, Belgium; .; Center for Plant Systems Biology, VIB, Ghent 9052, Belgium.
Van de Peer Y; Department of Plant Biotechnology and Bioinformatics, Ghent University 9052 Ghent, Belgium; .; Center for Plant Systems Biology, VIB, Ghent 9052, Belgium.; Department of Biochemistry, Genetics, and Microbiology, University of Pretoria, Pretoria 0028, South Africa.; College of Horticulture, Nanjing Agricultural University, Nanjing 210095, China.
Lei J; College of Horticulture, Shenyang Agricultural University, Shenyang 110866, China; .
Zhang T; School of Chinese Material Medica, Yunnan University of Chinese Medicine, Kunming 650500, China .
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Źródło :
Proceedings of the National Academy of Sciences of the United States of America [Proc Natl Acad Sci U S A] 2021 Nov 09; Vol. 118 (45).
Typ publikacji :
Comparative Study; Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms :
Biological Evolution*
Genome, Plant*
Fragaria/*genetics
Fragaria/classification ; Genetic Variation ; Phylogeography ; Pigmentation/genetics ; Selection, Genetic ; Whole Genome Sequencing
Czasopismo naukowe
Tytuł :
Genome-Wide Identification of ARF Gene Family Suggests a Functional Expression Pattern during Fruitlet Abscission in Prunus avium L.
Autorzy :
Hou Q; Key Laboratory of Plant Resource Conservation and Germplasm Innovation in Mountainous Region (Ministry of Education), Collaborative Innovation Center for Mountain Ecology & Agro-Bioengineering (CICMEAB), Institute of Agro-Bioengineering/College of Life Sciences, Guizhou University, Guiyang 550025, China.
Qiu Z; Key Laboratory of Plant Resource Conservation and Germplasm Innovation in Mountainous Region (Ministry of Education), Collaborative Innovation Center for Mountain Ecology & Agro-Bioengineering (CICMEAB), Institute of Agro-Bioengineering/College of Life Sciences, Guizhou University, Guiyang 550025, China.
Wen Z; Key Laboratory of Plant Resource Conservation and Germplasm Innovation in Mountainous Region (Ministry of Education), Collaborative Innovation Center for Mountain Ecology & Agro-Bioengineering (CICMEAB), Institute of Agro-Bioengineering/College of Life Sciences, Guizhou University, Guiyang 550025, China.
Zhang H; College of Forestry, Guizhou University/Institute for Forest Resources & Environment of Guizhou, Guiyang 550025, China.
Li Z; College of Forestry, Guizhou University/Institute for Forest Resources & Environment of Guizhou, Guiyang 550025, China.
Hong Y; Key Laboratory of Plant Resource Conservation and Germplasm Innovation in Mountainous Region (Ministry of Education), Collaborative Innovation Center for Mountain Ecology & Agro-Bioengineering (CICMEAB), Institute of Agro-Bioengineering/College of Life Sciences, Guizhou University, Guiyang 550025, China.
Qiao G; Key Laboratory of Plant Resource Conservation and Germplasm Innovation in Mountainous Region (Ministry of Education), Collaborative Innovation Center for Mountain Ecology & Agro-Bioengineering (CICMEAB), Institute of Agro-Bioengineering/College of Life Sciences, Guizhou University, Guiyang 550025, China.
Wen X; Key Laboratory of Plant Resource Conservation and Germplasm Innovation in Mountainous Region (Ministry of Education), Collaborative Innovation Center for Mountain Ecology & Agro-Bioengineering (CICMEAB), Institute of Agro-Bioengineering/College of Life Sciences, Guizhou University, Guiyang 550025, China.
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Źródło :
International journal of molecular sciences [Int J Mol Sci] 2021 Nov 04; Vol. 22 (21). Date of Electronic Publication: 2021 Nov 04.
Typ publikacji :
Journal Article
MeSH Terms :
Genome, Plant*
Response Elements*
Stress, Physiological*
Fruit/*metabolism
Indoleacetic Acids/*metabolism
Plant Proteins/*metabolism
Prunus avium/*metabolism
Fruit/genetics ; Fruit/growth & development ; Gene Expression Regulation, Plant ; Genome-Wide Association Study ; Plant Growth Regulators/metabolism ; Plant Proteins/genetics ; Prunus avium/genetics ; Prunus avium/growth & development
Czasopismo naukowe
Tytuł :
SARS-CoV-2 B.1.1.7 lineage rapidly spreads and replaces R.1 lineage in Japan: Serial and stationary observation in a community.
Autorzy :
Hirotsu Y; Genome Analysis Center, Yamanashi Central Hospital, 1-1-1 Fujimi, Kofu, Yamanashi, Japan. Electronic address: .
Omata M; Department of Gastroenterology, Yamanashi Central Hospital, 1-1-1 Fujimi, Kofu, Yamanashi, Japan; The University of Tokyo, 7-3-1 Hongo, Bunkyo-ku, Tokyo, Japan.
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Źródło :
Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases [Infect Genet Evol] 2021 Nov; Vol. 95, pp. 105088. Date of Electronic Publication: 2021 Sep 21.
Typ publikacji :
Journal Article; Observational Study; Research Support, Non-U.S. Gov't
MeSH Terms :
Genome, Viral*
COVID-19/*epidemiology
COVID-19/*transmission
SARS-CoV-2/*genetics
COVID-19/virology ; Epidemiological Monitoring ; Humans ; Japan/epidemiology ; Phylogeny ; Prevalence ; RNA, Viral/genetics ; SARS-CoV-2/classification ; SARS-CoV-2/growth & development ; SARS-CoV-2/pathogenicity ; Whole Genome Sequencing
Czasopismo naukowe
Tytuł :
GWAS for genetics of complex quantitative traits: Genome to pangenome and SNPs to SVs and k-mers.
Autorzy :
Gupta PK; Department of Genetics and Plant Breeding, Ch. Charan Singh University Meerut, Meerut, Uttar Pradesh, India.
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Źródło :
BioEssays : news and reviews in molecular, cellular and developmental biology [Bioessays] 2021 Nov; Vol. 43 (11), pp. e2100109. Date of Electronic Publication: 2021 Sep 06.
Typ publikacji :
Journal Article
MeSH Terms :
Genome-Wide Association Study*
Polymorphism, Single Nucleotide*/genetics
Genome, Plant/genetics ; Humans ; Phenotype
Czasopismo naukowe
Tytuł :
Complete chloroplast genome sequencing and comparative analysis reveals changes to the chloroplast genome after allopolyploidization in Cucumis .
Autorzy :
Zhai Y; State Key Laboratory of Crop Genetics and Germplasm Enhancement, College of Horticulture, Nanjing Agricultural University, Nanjing, Jiangsu, China.
Yu X; State Key Laboratory of Crop Genetics and Germplasm Enhancement, College of Horticulture, Nanjing Agricultural University, Nanjing, Jiangsu, China.
Zhou J; College of Horticulture and Landscape, Henan Institute of Science and Technology, Xinxiang, Henan, China.
Li J; State Key Laboratory of Crop Genetics and Germplasm Enhancement, College of Horticulture, Nanjing Agricultural University, Nanjing, Jiangsu, China.
Tian Z; State Key Laboratory of Crop Genetics and Germplasm Enhancement, College of Horticulture, Nanjing Agricultural University, Nanjing, Jiangsu, China.
Wang P; State Key Laboratory of Crop Genetics and Germplasm Enhancement, College of Horticulture, Nanjing Agricultural University, Nanjing, Jiangsu, China.
Meng Y; State Key Laboratory of Crop Genetics and Germplasm Enhancement, College of Horticulture, Nanjing Agricultural University, Nanjing, Jiangsu, China.
Zhao Q; State Key Laboratory of Crop Genetics and Germplasm Enhancement, College of Horticulture, Nanjing Agricultural University, Nanjing, Jiangsu, China.
Lou Q; State Key Laboratory of Crop Genetics and Germplasm Enhancement, College of Horticulture, Nanjing Agricultural University, Nanjing, Jiangsu, China.
Du S; State Key Laboratory of Vegetable Germplasm Innovation, Tianjin Kernel Cucumber Research Institute, Tianjin, China.
Chen J; State Key Laboratory of Crop Genetics and Germplasm Enhancement, College of Horticulture, Nanjing Agricultural University, Nanjing, Jiangsu, China.; State Key Laboratory of Vegetable Germplasm Innovation, Tianjin Kernel Cucumber Research Institute, Tianjin, China.
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Źródło :
Genome [Genome] 2021 Jun; Vol. 64 (6), pp. 627-638. Date of Electronic Publication: 2021 Jan 18.
Typ publikacji :
Journal Article
MeSH Terms :
Genome, Plant*
Chloroplasts/*genetics
Cucumis/*genetics
Genome, Chloroplast/*genetics
Base Composition ; Cell Nucleus ; Chloroplasts/classification ; DNA, Plant/genetics ; Diploidy ; Gene Order ; Hybridization, Genetic ; Phylogeny ; Polymorphism, Single Nucleotide ; Polyploidy ; Whole Genome Sequencing
Czasopismo naukowe
Tytuł :
Efficient Differentially Private Methods for a Transmission Disequilibrium Test in Genome Wide Association Studies.
Autorzy :
Yamamoto A; Division of Medical Data Informatics, Human Genome Center, The Institute of Medical Science, The University of Tokyo, Tokyo 108-8639, Japan, .
Shibuya T
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Źródło :
Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing [Pac Symp Biocomput] 2022; Vol. 27, pp. 85-96.
Typ publikacji :
Journal Article
MeSH Terms :
Computational Biology*
Genome-Wide Association Study*
Algorithms ; Genome, Human ; Humans ; Linkage Disequilibrium ; Polymorphism, Single Nucleotide
Czasopismo naukowe
Tytuł :
Integrative utility of long read sequencing-based whole genome analysis and phenotypic assay on differentiating isoniazid-resistant signature of Mycobacterium tuberculosis.
Autorzy :
Yu MC; Division of Pulmonary Medicine, Department of Internal Medicine, Wan Fang Hospital, Taipei Medical University, Taipei, Taiwan.; School of Respiratory Therapy, College of Medicine, Taipei Medical University, Taipei, Taiwan.; Pulmonary Research Center, Wan Fang Hospital, Taipei Medical University, Taipei, Taiwan.
Hung CS; Ph.D. Program in Medical Biotechnology, College of Medical Science and Technology, Taipei Medical University, Taipei, Taiwan.; Department of Laboratory Medicine, Wan Fang Hospital, Taipei Medical University, Taipei, Taiwan.
Huang CK; Department of Laboratory Medicine, Wan Fang Hospital, Taipei Medical University, Taipei, Taiwan.; School of Medical Laboratory Science and Biotechnology, College of Medical Science and Technology, Taipei Medical University, 250 Wu-Hsing Street, Taipei, 11031, Taiwan.
Wang CH; Pulmonary Research Center, Wan Fang Hospital, Taipei Medical University, Taipei, Taiwan.; Department of Laboratory Medicine, Wan Fang Hospital, Taipei Medical University, Taipei, Taiwan.; School of Medical Laboratory Science and Biotechnology, College of Medical Science and Technology, Taipei Medical University, 250 Wu-Hsing Street, Taipei, 11031, Taiwan.
Liang YC; Ph.D. Program in Medical Biotechnology, College of Medical Science and Technology, Taipei Medical University, Taipei, Taiwan. .; School of Medical Laboratory Science and Biotechnology, College of Medical Science and Technology, Taipei Medical University, 250 Wu-Hsing Street, Taipei, 11031, Taiwan. .
Lin JC; Pulmonary Research Center, Wan Fang Hospital, Taipei Medical University, Taipei, Taiwan. .; Ph.D. Program in Medical Biotechnology, College of Medical Science and Technology, Taipei Medical University, Taipei, Taiwan. .; School of Medical Laboratory Science and Biotechnology, College of Medical Science and Technology, Taipei Medical University, 250 Wu-Hsing Street, Taipei, 11031, Taiwan. .
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Źródło :
Journal of biomedical science [J Biomed Sci] 2021 Dec 18; Vol. 28 (1), pp. 86. Date of Electronic Publication: 2021 Dec 18.
Typ publikacji :
Journal Article
MeSH Terms :
Genome, Bacterial*
Antitubercular Agents/*pharmacology
Drug Resistance, Bacterial/*genetics
Isoniazid/*pharmacology
Mycobacterium tuberculosis/*genetics
Mycobacterium tuberculosis/drug effects ; Phenotype ; Whole Genome Sequencing
Czasopismo naukowe
Tytuł :
The pink salmon genome: Uncovering the genomic consequences of a two-year life cycle.
Autorzy :
Christensen KA; West Vancouver, Fisheries and Oceans Canada, British Columbia, Canada.; Department of Biology, University of Victoria, Victoria, British Columbia, Canada.
Rondeau EB; West Vancouver, Fisheries and Oceans Canada, British Columbia, Canada.; Department of Biology, University of Victoria, Victoria, British Columbia, Canada.; Pacific Biological Station, Fisheries and Oceans Canada, Nanaimo, British Columbia, Canada.
Sakhrani D; West Vancouver, Fisheries and Oceans Canada, British Columbia, Canada.
Biagi CA; West Vancouver, Fisheries and Oceans Canada, British Columbia, Canada.
Johnson H; Department of Biology, University of Victoria, Victoria, British Columbia, Canada.
Joshi J; Department of Biology, University of Victoria, Victoria, British Columbia, Canada.
Flores AM; Department of Biology, University of Victoria, Victoria, British Columbia, Canada.
Leelakumari S; Canada's Michael Smith Genome Sciences Centre, BC Cancer, Vancouver, British Columbia, Canada.
Moore R; Canada's Michael Smith Genome Sciences Centre, BC Cancer, Vancouver, British Columbia, Canada.
Pandoh PK; Canada's Michael Smith Genome Sciences Centre, BC Cancer, Vancouver, British Columbia, Canada.
Withler RE; Pacific Biological Station, Fisheries and Oceans Canada, Nanaimo, British Columbia, Canada.
Beacham TD; Pacific Biological Station, Fisheries and Oceans Canada, Nanaimo, British Columbia, Canada.
Leggatt RA; West Vancouver, Fisheries and Oceans Canada, British Columbia, Canada.
Tarpey CM; School of Aquatic and Fishery Sciences, University of Washington, Seattle, Washington, United States of America.
Seeb LW; School of Aquatic and Fishery Sciences, University of Washington, Seattle, Washington, United States of America.
Seeb JE; School of Aquatic and Fishery Sciences, University of Washington, Seattle, Washington, United States of America.
Jones SJM; Canada's Michael Smith Genome Sciences Centre, BC Cancer, Vancouver, British Columbia, Canada.
Devlin RH; West Vancouver, Fisheries and Oceans Canada, British Columbia, Canada.
Koop BF; Department of Biology, University of Victoria, Victoria, British Columbia, Canada.
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Źródło :
PloS one [PLoS One] 2021 Dec 17; Vol. 16 (12), pp. e0255752. Date of Electronic Publication: 2021 Dec 17 (Print Publication: 2021).
Typ publikacji :
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms :
Genetic Speciation*
Genome*
Fish Proteins/*genetics
Life Cycle Stages/*genetics
Reproduction/*genetics
Salmon/*genetics
Animals ; Canada ; Female ; Fish Proteins/classification ; Fish Proteins/metabolism ; Gene Expression ; Genetics, Population ; Genomics/methods ; Japan ; Male ; Pacific Ocean ; Polymorphism, Genetic ; Reproductive Isolation ; Rivers ; Salmon/classification ; Salmon/growth & development ; Salmon/metabolism ; Whole Genome Sequencing
Czasopismo naukowe
Tytuł :
Pangenomics enables genotyping of known structural variants in 5202 diverse genomes.
Autorzy :
Sirén J; UC Santa Cruz Genomics Institute, Santa Cruz, CA, USA.
Monlong J; UC Santa Cruz Genomics Institute, Santa Cruz, CA, USA.
Chang X; UC Santa Cruz Genomics Institute, Santa Cruz, CA, USA.
Novak AM; UC Santa Cruz Genomics Institute, Santa Cruz, CA, USA.
Eizenga JM; UC Santa Cruz Genomics Institute, Santa Cruz, CA, USA.
Markello C; UC Santa Cruz Genomics Institute, Santa Cruz, CA, USA.
Sibbesen JA; UC Santa Cruz Genomics Institute, Santa Cruz, CA, USA.
Hickey G; UC Santa Cruz Genomics Institute, Santa Cruz, CA, USA.
Chang PC; Google Inc., Mountain View, CA, USA.
Carroll A; Google Inc., Mountain View, CA, USA.
Gupta N; Genomics Platform, Broad Institute, Cambridge, MA, USA.
Gabriel S; Program in Medical and Population Genetics, Broad Institute, Cambridge, MA, USA.
Blackwell TW; Center for Statistical Genetics, University of Michigan, Ann Arbor, MI, USA.
Ratan A; Center for Public Health Genomics, University of Virginia, Charlottesville, VA, USA.
Taylor KD; The Institute for Translational Genomics and Population Sciences, Department of Pediatrics, The Lundquist Institute for Biomedical Innovation at Harbor-UCLA Medical Center, Torrance, CA, USA.
Rich SS; Center for Public Health Genomics, University of Virginia, Charlottesville, VA, USA.
Rotter JI; The Institute for Translational Genomics and Population Sciences, Department of Pediatrics, The Lundquist Institute for Biomedical Innovation at Harbor-UCLA Medical Center, Torrance, CA, USA.
Haussler D; UC Santa Cruz Genomics Institute, Santa Cruz, CA, USA.; Howard Hughes Medical Institute, University of California, Santa Cruz, CA, USA.
Garrison E; Department of Genetics, Genomics, and Informatics, University of Tennessee Health Science Center, Memphis, TN, USA.
Paten B; UC Santa Cruz Genomics Institute, Santa Cruz, CA, USA.
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Źródło :
Science (New York, N.Y.) [Science] 2021 Dec 17; Vol. 374 (6574), pp. abg8871. Date of Electronic Publication: 2021 Dec 17.
Typ publikacji :
Journal Article; Research Support, N.I.H., Extramural
MeSH Terms :
Genetic Variation*
Genome, Human*
Genotyping Techniques*
Genomics/*methods
Algorithms ; Alleles ; Computational Biology ; Genome, Fungal ; Genotype ; Haplotypes ; High-Throughput Nucleotide Sequencing ; Humans ; Polymorphism, Single Nucleotide ; Quantitative Trait Loci ; Saccharomyces/genetics ; Saccharomyces cerevisiae/genetics ; Sequence Analysis, DNA
SCR Organism :
Saccharomyces paradoxus
Czasopismo naukowe

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